T-Coffee Server
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Core
Evaluates your Alignment and outputs a Colored version indicating the local reliability.
Alignment input
Paste or upload your Multiple Sequence Alignment in CLUSTAL format.
Alignment
Click here to use the sample file
- OR -
Click here to upload a file
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Library Computation
Your alignment is evaluated by comparison against a collection of alignments. This collection is named a Library. This section lets you control the computation of the library. Different libraries give different score results
Pairwise Methods
Mlalign_id_pair
Mfast_pair
Mproba_pair
Mclustalw_pair
Mslow_pair
Mkalign_msa
Mmafft_msa
Mmuscle_msa
Output options
Use this section to control the output format.
Alignment format
score_html
clustalw_aln
pir_aln
pir_seq
gcg
fasta_aln
score_ascii
msf_aln
phylip
score_pdf
Case
upper
lower
keep
Residue number
on
off
outorder
input
aligned
Alignment length
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T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona
T-Coffee Server is hosted by the Centre for Genomic Regulation (CRG) of Barcelona